{"@type": "dcat:Dataset", "accessLevel": "public", "accrualPeriodicity": "irregular", "bureauCode": ["006:55"], "contactPoint": {"fn": "Justin Zook", "hasEmail": "mailto:justin.zook@nist.gov"}, "description": "The Human Pangenome Reference Consortium (HPRC) tested which combination of current genome sequencing and automated assembly approaches yields the most complete, accurate, and cost-effective diploid genome assemblies with minimal manual curation.  Assemblies were generated for GIAB HG002. Variant calls from twenty-nine assemblies were evaluated by NIST using dipcall v0.3 (https://github.com/lh3/dipcall) to produce variant calls when aligned to GRCh38.  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"https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm5.tar.gz.sha256", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm16ab.tar.gz", "mediaType": "application/gzip"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm16ab.tar.gz.sha256", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm3a.tar.gz", "mediaType": "application/gzip"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm3a.tar.gz.sha256", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm4a.tar.gz", "mediaType": "application/gzip"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm4a.tar.gz.sha256", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm13.tar.gz", "mediaType": "application/gzip"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/assemblies-and-benchmarking_results/asm13.tar.gz.sha256", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/snakemake-pipeline/config.yaml", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/README.md", "mediaType": "text/plain"}, {"downloadURL": "https://data.nist.gov/od/ds/ark:/88434/mds2-2578/benchmarking-summary-metrics/HPRC-Assembly-Benchmarking_Reported-summary-metrics.R", "format": "R file", "mediaType": "text/plain"}], "identifier": "ark:/88434/mds2-2578", "keyword": ["Human genomics; DNA sequencing; Reference materials;  genome assembly; variant calling; benchmarking; HG002; HPRC"], "landingPage": "https://data.nist.gov/od/id/mds2-2578", "language": ["en"], "license": "https://www.nist.gov/open/license", "modified": "2021-12-20 00:00:00", "programCode": ["006:045"], "publisher": {"@type": "org:Organization", "name": "National Institute of Standards and Technology"}, "references": ["https://doi.org/10.1101/2022.03.06.483034"], "rights": "The assemblies provided by Human Pangenome Reference Consortium (HPRC) for evaluation were generated by the HPRC, and its data use protocol is at https://humanpangenome.org/data-use-protocol/", "theme": ["Bioscience:Genomic measurements"], "title": "GIAB Benchmarking of HG002 Assemblies from HPRC Year 1 Bakeoff"}