{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["005:18"], "contactPoint": {"fn": "Markin, Alexey", "hasEmail": "mailto:alexey.markin@usda.gov"}, "description": "<p dir=\"ltr\">This repository contains scripts and data to replicate the experiments from<br>Markin, A., Macken, C.A., Baker, A.L., and Anderson, T.K., 2024. <b>Revealing reassortment in influenza A viruses with TreeSort</b>. bioRxiv 2024.11.15.623781; doi: <a href=\"https://doi.org/10.1101/2024.11.15.623781\" rel=\"noreferrer\" target=\"_blank\">https://doi.org/10.1101/2024.11.15.623781</a></p><p><br></p><p><br></p><p dir=\"ltr\">For the TreeSort tool and tutorial, see <a href=\"https://github.com/flu-crew/TreeSort\" rel=\"noreferrer\" target=\"_blank\">https://github.com/flu-crew/TreeSort</a>.</p><p dir=\"ltr\">Unzip TreeSort-experiments.zip and see the nested directories and README files for instructions to replicate the study.</p><p dir=\"ltr\">- See 'simulations' directory for code and instructions to replicate the simulation study.<br>- See 'IAV-reasortment-analysis' directory for data and code to replicate the analysis of reassortment rates and patterns among avian, swine, and human IAV lineages.</p><p dir=\"ltr\"><br></p><p dir=\"ltr\">Contact alexey.markn@usda.gov for questions.</p><p dir=\"ltr\"><br></p>", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/51224678", "format": "zip", "mediaType": "application/zip", "title": "TreeSort-experiments.zip"}], "identifier": "10.15482/USDA.ADC/28039040.v1", "keyword": ["Influenza A", "Reassortment"], "license": "https://creativecommons.org/publicdomain/zero/1.0/", "modified": "2025-05-06", "programCode": ["005:040"], "publisher": {"@type": "org:Organization", "name": "Agricultural Research Service"}, "temporal": "2024-11-01/2024-11-01", "title": "Data and scripts from: Revealing reassortment in influenza A viruses with TreeSort"}