{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["005:18"], "contactPoint": {"fn": "Sim, Sheina B.", "hasEmail": "mailto:sheina.sim@usda.gov"}, "description": "<p dir=\"ltr\">The data in this repository is to provide the scripts used in the assembly of the <i>Anastrepha ludens </i>genome. It can be used to replicate the steps necessary to assemble the genome described in National Center for Biotechnology Information (NCBI) BioProject: <a href=\"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA803324/\" target=\"_blank\">PRJNA803324</a>. This genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda.</p><p><br></p>", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/46146660", "format": "sh", "mediaType": "text/x-shellscript", "title": "blob.sh"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/46146666", "format": "sh", "mediaType": "text/x-shellscript", "title": "hifiasm.sh"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/46146669", "format": "sh", "mediaType": "text/x-shellscript", "title": "genomescope2.sh"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/46146672", "format": "sh", "mediaType": "text/x-shellscript", "title": "hifiadapterfiltFCS.sh"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/46146675", "format": "sh", "mediaType": "text/x-shellscript", "title": "hic_yahs.sh"}, {"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/46146714", "format": "sh", "mediaType": "text/x-shellscript", "title": "busco5.sh"}], "identifier": "10.15482/USDA.ADC/25762509.v1", "keyword": ["genome assembly protocol", "genome assembly", "genome", "chromosomes", "Anastrepha ludens", "Mexican fruit fly", "Mexfly"], "license": "https://creativecommons.org/licenses/by/4.0/", "modified": "2026-03-25", "programCode": ["005:040"], "publisher": {"@type": "org:Organization", "name": "Agricultural Research Service"}, "temporal": "2024-05-07/2024-05-07", "title": "Anastrepha ludens genome assembly scripts"}