{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["005:18"], "contactPoint": {"fn": "Schoville, Sean", "hasEmail": "mailto:sean.schoville@wisc.edu"}, "description": "<p>The <em>Leptinotarsa decemlineata</em> genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the <em>Leptinotarsa decemlineata</em> gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.</p>\n<p>NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.</p>\n<p>If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: <a href=\"https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use\">https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use</a></p>\n<div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0.</p> <p>File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gz</p><p>Resource Description: </p><p>The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:</p>\n\n<p>LDEC.Analysis.gff3.gz.  This file contains evidence gff3 format underlying the final gene predictions.</p>\n\n<p>LDEC.CDS.fna.gz. CDS sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p>\n\n<p>LDEC.faa.gz Amino acid sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p>\n\n<p>LDEC.fna.gz cDNA sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p>\n\n<p>LDEC.Models.gff3.gz Gff3 of all gene predictions of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.</p>\n<p></p></li></ul><p></p>", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://ndownloader.figshare.com/files/44336609", "format": "gz", "mediaType": "application/x-gzip", "title": "Ldec_genome_annotations_BCM_version_0.5.3.tar.gz"}], "identifier": "10.15482/USDA.ADC/1391716", "keyword": ["i5k", "Insects", "Leptinotarsa decemlineata", "Colorado Potato Beetle", "data.gov", "ARS"], "license": "https://creativecommons.org/licenses/by-sa/4.0/", "modified": "2025-04-30", "programCode": ["005:040"], "publisher": {"@type": "org:Organization", "name": "Agricultural Research Service"}, "temporal": "2014-01-01/2014-01-01", "title": "Leptinotarsa decemlineata genome annotations v0.5.3"}