{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["009:25"], "contactPoint": {"@type": "vcard:Contact", "fn": "National Library of Medicine", "hasEmail": "mailto:custserv@nlm.nih.gov"}, "description": "NCBI Pathogen Detection integrates bacterial pathogen genomic sequences originating in food, environmental sources, and patients. It quickly clusters and identifies related sequences to uncover potential food contamination sources, helping public health scientists investigate foodborne disease outbreaks.", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://www.ncbi.nlm.nih.gov/pathogens/isolates/", "mediaType": "text/html", "title": "Isolates Browser"}, {"@type": "dcat:Distribution", "description": "This interface contains a subset of the isolates from the Isolate Browser that have genomic sequence data available in GenBank and have genotypes identified by AMRFinderPlus at the time they were analyzed.", "downloadURL": "https://www.ncbi.nlm.nih.gov/pathogens/microbigge/", "mediaType": "text/html", "title": "Pathogen Detection Microbial Browser for Identification of Genetic and Genomic Elements (MicroBIGG-E)"}, {"@type": "dcat:Distribution", "downloadURL": "https://www.ncbi.nlm.nih.gov/pathogens/refgene/", "mediaType": "text/html", "title": "Reference Gene Catalog"}, {"@type": "dcat:Distribution", "description": "Reference set of hidden Markov models (HMMs) used by AMRFinderPlus to identify protein families in conjunction with Reference Gene Catalog", "downloadURL": "https://www.ncbi.nlm.nih.gov/pathogens/hmm/", "mediaType": "text/html", "title": "Reference HMM Catalog"}, {"@type": "dcat:Distribution", "description": "antibiogram[filter] applied to BioSample", "downloadURL": "https://www.ncbi.nlm.nih.gov/biosample/?term=antibiogram%5bfilter%5d", "mediaType": "text/html", "title": "Isolates with antibiotic resistant phenotypes"}, {"@type": "dcat:Distribution", "downloadURL": "https://ftp.ncbi.nlm.nih.gov/pathogen/Results/", "mediaType": "text/html", "title": "Download analysis results (FTP)"}], "identifier": "https://datadiscovery.nlm.nih.gov/api/views/4gse-hiry", "issued": "2021-08-27", "keyword": ["dataset", "public health"], "landingPage": "https://www.ncbi.nlm.nih.gov/pathogens/", "license": "http://opendefinition.org/licenses/odc-odbl/", "modified": "2025-06-18", "programCode": ["009:041"], "publisher": {"@type": "org:Organization", "name": "National Library of Medicine"}, "theme": ["Biomedical Research"], "title": "Pathogen Detection (BETA)"}