{"@type": "dcat:Dataset", "accessLevel": "public", "bureauCode": ["005:18"], "contactPoint": {"fn": "Hubbard, Suzanne", "hasEmail": "mailto:suzanne.hubbard@usda.gov"}, "description": "<p>The findhap.f90 program finds haplotypes and imputes genotypes using multiple chip sets and sequence data. Program and download information can be found at the Animal Improvement Program (AIP) web site: <a href=\"http://aipl.arsusda.gov/software/findhap\">http://aipl.arsusda.gov/software/findhap</a></p>\n<p><strong>Downloads</strong>\nVersion 4 program, example files, and executable\n(beta version \u2014 not quite ready for routine use on U.S. chip data, but performs better than version 3 for sequence data)</p>\n<p><a href=\"https://aipl.arsusda.gov/software/findhap/SequenceFiles.zip\">Example data files</a> for <a href=\"https://asas.org/docs/default-source/wcgalp-proceedings-oral/179_paper_9110_manuscript_445_0.pdf\">imputation study</a> presented by VanRaden and Sun at the 2014 World Congress on Genetics Applied to Livestock Production</p>\n<ul>\n<li>Files include actual pedigree, simulated true genotypes, simulated sequence reads, and imputed genotypes.</li>\n<li>This example used 500 reference bulls sequenced at 4\u00d7 with 1% error and containing high-density SNPs; the 250 young bulls used to test imputation had only high-density SNPs.</li>\n<li>\n<p>Other examples in the study can be generated by setting other options for programs findhap4, geno2seq, and genosim.</p>\n<div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: FINDHAP.</p> <p>File Name: Web Page, url: <a href=\"https://www.ars.usda.gov/research/software/download/?softwareid=494&modecode=80-42-05-30\" target=\"_blank\">https://www.ars.usda.gov/research/software/download/?softwareid=494&modecode=80-42-05-30</a> </p><p>download page</p></li></ul>\n</li>\n</ul>", "distribution": [{"@type": "dcat:Distribution", "downloadURL": "https://www.ars.usda.gov/research/software/download/?softwareid=494&modecode=80-42-05-30", "mediaType": "text/html", "title": "https://www.ars.usda.gov/research/software/download/?softwareid=494&modecode=80-42-05-30"}], "identifier": "10113/AA22724", "keyword": ["computer software", "models", "haplotypes", "animals", "chromosomes", "gene frequency", "single nucleotide polymorphism", "alleles"], "license": "https://creativecommons.org/publicdomain/zero/1.0/", "modified": "2024-02-13", "programCode": ["005:040"], "publisher": {"@type": "org:Organization", "name": "Agricultural Research Service"}, "title": "FINDHAP"}