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    • Neodiprion lecontei Official Gene Set v1.1

    Metadata Updated: December 2, 2025

    This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome assembly Nlec1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/).

    This dataset is now obsolete - a new genome assembly, iyNeoleco1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1) has been produced by the Ag100Pest project, with annotations from NCBI's RefSeq resource.


    Resources in this dataset:


    • Resource Title: Neodiprion lecontei Official Gene Set v1.1.

      File Name: neolec_OGSv1.1.tar.gz

      Resource Description: The files in this directory are derived from Neolec OGSv1.0 (not publicly released). The gff3 file was updated to assembly GCA_001263575.2 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2) using CrossMap v0.2.8 (http://crossmap.sourceforge.net/).

      neolec_OGSv1.1.gff3: Neolec OGSv1.0, updated to GCA_001263575.2 neolec_OGSv1.1_removed.tsv: Features from Neolec OGSv1.0 that were removed in the update neolec_OGSv1.1_summary.tsv: The % of individual features from Neolec OGSv1.0 that were retained in the update Nlec_v1_transcripts_renamed_alphabetized.fasta: Transcript sequences derived from Neolec OGSv1.0 Nlec_v1_proteins_renamed_alphabetized.fasta: Protein sequences derived from Neolec OGSv1.0

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons Attribution Share-Alike

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date December 2, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date December 2, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/1527886
    Data Last Modified 2025-11-21
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 800984f8-fea8-41b9-a0b7-6e4b31b10328
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/licenses/by-sa/4.0/
    Old Spatial {"type": "Point", "coordinates": -84.5037, 38.0406}
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 68e0ad544be1a15270618b564ca298052079a7bcb73ab00a3f1cbe4219274e43
    Source Schema Version 1.1
    Spatial {"type": "Point", "coordinates": -84.5037, 38.0406}
    Temporal 2018-05-01/2018-05-01

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