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    • Halyomorpha halys Official Gene Set v1.2

    Metadata Updated: December 2, 2025

    This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.2. OGSv1.2 is an update of Halyomorpha halys OGSv1.1 (https://doi.org/10.15482/USDA.ADC/1504240) to the coordinates of genome assembly GCA_000696795.3 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000696795.3) using https://github.com/NAL-i5K/coordinates_conversion/.

    The original OGSv1.0 is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/; ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_Hhal_1.0), with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). Manual annotations performed by the community were downloaded from Apollo, QC'd, and merged with NCBI Halyomorpha halys Annotation Release 100 using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4). The resulting merged dataset was formatted for ingest into the i5k Workspace and GenBank databases, resulting in Halyomorpha halys Official Gene Set (OGS) v1.0.

    Halyomorpha Official Gene Set halhal_OGSv1.1 is a minor update of halhal_OGSv1.0: Alias attributes were added to all manually annotated cathepsin models; six models from contaminated scaffolds were removed; and notes were added to 3 models located on possibly contaminated scaffolds.


    Resources in this dataset:


    • Resource Title: Halymorpha halys Official Gene Set OGSv1.2.

      File Name: halhal_OGSv1.2.tar.gz

      Resource Description: The attached tar.gz archive (halhal_OGSv1.2.tar.gz) contains the following files:

      halhal_OGSv1.2.gff. Gff3 of all gene predictions of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_CDS.fa. CDS sequences of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_pep.fa. Amino acid sequences of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_trans.fa. Transcript sequences of Halymorpha halys genome annotations OGSv1.2 readme. Readme file describing Halymorpha halys genome annotations OGSv1.2

    Access & Use Information

    Public: This dataset is intended for public access and use. License: Creative Commons Attribution Share-Alike

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date December 2, 2025

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date December 2, 2025
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/1518751
    Data Last Modified 2025-11-21
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id 98dfbcb2-4ddd-4fc1-bc32-369de2bf7c5f
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://creativecommons.org/licenses/by-sa/4.0/
    Old Spatial {"type": "Polygon", "coordinates": -172.96875, -85.973919490277, -172.96875, 85.513398309887, 194.0625, 85.513398309887, 194.0625, -85.973919490277, -172.96875, -85.973919490277}
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash f981667b5c3a436ee3c183de4eec620077fd7a8226ea5763d60732531f94939a
    Source Schema Version 1.1
    Spatial {"type": "Polygon", "coordinates": -172.96875, -85.973919490277, -172.96875, 85.513398309887, 194.0625, 85.513398309887, 194.0625, -85.973919490277, -172.96875, -85.973919490277}
    Temporal 2019-01-01/2019-01-01

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