Data Catalog

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  NCBI Virus

  U.S. Department of Health & Human Services —

  NCBI Virus is an integrative, value-added resource designed to support retrieval, display and analysis of a curated collection of virus sequences and large sequence...

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  NCBI Datasets

  U.S. Department of Health & Human Services —

  NCBI Datasets is one-stop shop for finding, browsing, and downloading genomic data. Find and download taxonomy, genome, gene, transcript, protein data, including...

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• Federal

  Structure - Molecular Modeling Database (MMDB)

  U.S. Department of Health & Human Services —

  Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine...

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  PSSM Viewer

  U.S. Department of Health & Human Services —

  Users can display, sort, subset and download position-specific score matrices (PSSMs) either from CDD records or from Position Specific Iterated (PSI)-BLAST protein...

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• Federal

  Protein

  U.S. Department of Health & Human Services —

  The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as...

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  BLAST (Basic Local Alignment Search Tool)

  U.S. Department of Health & Human Services —

  BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences. BLAST includes several specialized search interfaces: SmartBLAST,...

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  Constraint-Based Multiple Alignment Tool (COBALT)

  U.S. Department of Health & Human Services —

  Constraint-Based Multiple Alignment Tool (COBALT) is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved...

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  Conserved Domain Database (CDD)

  U.S. Department of Health & Human Services —

  Conserved Domain Database (CDD) is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient...

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  Multiple Sequence Alignment (MSA) Viewer

  U.S. Department of Health & Human Services —

  An interactive Web application that enables users to visualize multiple alignments created by database search results or other software applications. The MSA Viewer...

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  ProSplign

  U.S. Department of Health & Human Services —

  A utility for computing alignment of proteins to genomic nucleotide sequence based on a variation of the Needleman Wunsch global alignment algorithm and specifically...

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  Vector Alignment Search Tool (VAST)

  U.S. Department of Health & Human Services —

  A computer algorithm that identifies similar protein 3-dimensional structures. Structure neighbors for every structure in MMDB are pre-computed and accessible via...

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  Consensus CDS (CCDS)

  U.S. Department of Health & Human Services —

  The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of...

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  CDTree

  U.S. Department of Health & Human Services —

  CDTree is a stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update...

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• Federal

  Protein Clusters

  U.S. Department of Health & Human Services —

  A collection of Reference Sequence (RefSeq) proteins, from the complete genomes of prokaryotes, plasmids, and organelles, that have been grouped and annotated based...

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You can also access this registry using the API (see API Docs).

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