40 datasets found
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Federal
Data from: Genotypic characterization of the U.S. peanut core collection
Department of Agriculture —
This collection contains supplementary data for the manuscript "Genotypic characterization of the U.S. Peanut Core Collection", which describes genotyping results for... -
Federal
Data from: Chromosome-Scale Assemblies of Flowering Dogwood Cultivars Enable Identification of Candidate Genes Regulating Anthocyanin Biosynthesis in Leaves and Bracts
Department of Agriculture —
For this study we generated diploid, chromosome-scale, annotated genome assemblies for flowering dogwood (Cornus florida). Genomes for two cultivars, Cherokee Brave™... -
Federal
Data from: A haplotype-resolved genome assembly of hexaploid Kentucky-31 tall fescue (<i>Lolium arundinaceum</i>)
Department of Agriculture —
Genome sequence with structural and functional annotation files of LoarK31 haplotype 1 and haplotype 2 genome assembly reported in the manuscript "A haplotype-... -
Federal
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Department of Agriculture —
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the... -
Federal
Data from: Genetic variations and accelerated growth at low temperatures in a <i>Listeria monocytogenes </i>isolate
Department of Agriculture —
Listeria monocytogenes contamination of fresh-cut produce poses a threat to consumers due to its high mortality rate. Because it is widespread in the environment, as... -
Federal
Data from: Putative neofunctionalization of a Poales-specific EXO70 clade
Department of Agriculture —
EXO70s are uniquely expanded in land plants compared to all other eukaryotic lineages. The functional implications of this expansion and diversification on the... -
Federal
Raw Sequences of 17 Aspergillus Genomes from Ethiopia
Department of Agriculture —
Raw genome sequencing data of 17 isolates of Aspergillus flavus and Aspergillus parasiticus collected from peanuts from Ethiopia. These isolates were selected as... -
Federal
Data from: Complex Reticulation in Backbone Subfamily Relationships in Leguminosae
Department of Agriculture —
Contradictory lines of evidence have made it difficult to resolve the phylogenetic history of the legume diversification era; this is true for the backbone topology,... -
Federal
Data from: Genetic variation among 481 diverse soybean accessions
Department of Agriculture —
This data is from the manuscript titled: "Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing". SNP calls were obtained from... -
Federal
Oncopeltus fasciatus genome annotations v0.5.3
Department of Agriculture —
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research... -
Federal
Data from: A fast method for the detection of <i>Salmonella</i> Typhimurium cells in egg biofilms on three different surfaces
Department of Agriculture —
Salmonella is a pathogenic microorganism linked to foodborne outbreaks associated with egg and egg products. This microorganism can resist sanitation of the egg... -
Federal
Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
Department of Agriculture —
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are... -
Federal
Data from: Agile Genetics: Single gene resolution without the fuss
Department of Agriculture —
These files are 250bp Illumina MiSeq paired-end sequencing reads in fastq format. Libraries were prepared from DNA fragments amplified from tomato bulk (heterogenous)... -
Federal
Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana
Department of Agriculture —
The data in this collection comprise gene annotations for Apios americana and Apios priceana. Annotations were carried out using the BRAKER3 pipeline (Gabriel et al.,... -
Federal
Data from: Development and application of an updated haplotype reference panel for association analysis of spontaneous sex reversal in XX rainbow trout
Department of Agriculture —
All-female lines are preferred for rainbow trout production because early sexual maturation in males causes reductions in production efficiency and product quality.... -
Federal
Data from: Combination of serial plating and long-read sequencing to detect and quantify live Shiga-toxin producing <i>Escherichia coli</i>
Department of Agriculture —
Consumption of food contaminated with Shiga toxin-producing Escherichia coli (STEC) causes millions of illnesses in the United States annually. Long-read sequencing... -
Federal
Functional annotation for 15 diverse arthropod genomes
Department of Agriculture —
We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of... -
Federal
Code from: Aspergillus flavus expression database (AFED), a comprehensive resource for Aspergillus flavus gene expression profiling
Department of Agriculture —
Public RNA-Seq data was used to quantify gene expression abundance for 604 Aspergillus flavus samples from 52 experiments (bioprojects). Using abundance data, we... -
Federal
Data from: Impacts of gene duplication in the evolution of symbiotic root nodule symbiosis
Department of Agriculture —
The emerging consensus regarding the origin of root nodule symbiosis (RNS), based on modeling of trait gain and loss across approximately 13,000 species within the... -
Federal
Long-read sequencing data from pure cultures of <i>Escherichia coli</i> O157:H7 and ground beef inoculated with <i>E. coli</i> O157:H7
Department of Agriculture —
Foodborne pathogens are a significant cause of illness and infection with Shiga toxin-producing Escherichia coli (STEC) has the potential to produce life-threatening...
40 datasets found